Homer Motifs

Motif	Best Match/Details	Motif File
	AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(1.000) More Information \| FOS info	motif file (matrix)
	AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer(1.000) More Information \| TFAP2C info	motif file (matrix)
	AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| TFAP2A info	motif file (matrix)
	Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer(1.000) More Information \| TFAP4 info	motif file (matrix)
	FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer(1.000) More Information \| info	motif file (matrix)
	ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer(1.000) More Information \| AR info	motif file (matrix)
	AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer(1.000) More Information \| info	motif file (matrix)
	Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer(1.000) More Information \| ARNT info	motif file (matrix)
	Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| ATF1 info	motif file (matrix)
	Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer(1.000) More Information \| ATF3 info	motif file (matrix)
	Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer(1.000) More Information \| ATF4 info	motif file (matrix)
	Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer(1.000) More Information \| ATOH1 info	motif file (matrix)
	Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| BACH1 info	motif file (matrix)
	Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer(1.000) More Information \| BACH2 info	motif file (matrix)
	BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer(1.000) More Information \| BATF info	motif file (matrix)
	Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer(1.000) More Information \| BCL6 info	motif file (matrix)
	bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| BHLHE40 info	motif file (matrix)
	BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer(1.000) More Information \| ARNTL info	motif file (matrix)
	BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(1.000) More Information \| MYBL2 info	motif file (matrix)
	BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| CTCFL info	motif file (matrix)
	Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer(0.633) More Information \| T info	motif file (matrix)
	bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer(1.000) More Information \| info	motif file (matrix)
	Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer(1.000) More Information \| CDX2 info	motif file (matrix)
	CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer(1.000) More Information \| info	motif file (matrix)
	CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer(1.000) More Information \| info	motif file (matrix)
	CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer(1.000) More Information \| CEBPB info	motif file (matrix)
	Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer(1.000) More Information \| DDIT3 info	motif file (matrix)
	CHR/Cell-Cycle-Exp/Homer(1.000) More Information \| info	motif file (matrix)
	CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer(1.000) More Information \| CLOCK info	motif file (matrix)
	c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer(1.000) More Information \| info	motif file (matrix)
	c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| MYC info	motif file (matrix)
	CRE(bZIP)/Promoter/Homer(1.000) More Information \| CREB1 info	motif file (matrix)
	CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer(1.000) More Information \| CRX info	motif file (matrix)
	CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer(1.000) More Information \| CTCF info	motif file (matrix)
	CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer(1.000) More Information \| info	motif file (matrix)
	Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer(1.000) More Information \| DMC1 info	motif file (matrix)
	E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer(1.000) More Information \| TCF3 info	motif file (matrix)
	E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer(1.000) More Information \| E2F1 info	motif file (matrix)
	E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| E2F4 info	motif file (matrix)
	E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| E2F6 info	motif file (matrix)
	E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer(1.000) More Information \| E2F7 info	motif file (matrix)
	E2F(E2F)/Cell-Cycle-Exp/Homer(1.000) More Information \| info	motif file (matrix)
	E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer(1.000) More Information \| info	motif file (matrix)
	EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer(1.000) More Information \| EBF1 info	motif file (matrix)
	EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer(1.000) More Information \| info	motif file (matrix)
	EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer(1.000) More Information \| info	motif file (matrix)
	E-box(HLH)/Promoter/Homer(1.000) More Information \| info	motif file (matrix)
	Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| EGR1 info	motif file (matrix)
	Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer(1.000) More Information \| EGR2 info	motif file (matrix)
	EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer(1.000) More Information \| EHF info	motif file (matrix)
	EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer(1.000) More Information \| KLF1 info	motif file (matrix)
	ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer(1.000) More Information \| ELF1 info	motif file (matrix)
	ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer(1.000) More Information \| ELF5 info	motif file (matrix)
	Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| ELK1 info	motif file (matrix)
	Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| ELK4 info	motif file (matrix)
	Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer(1.000) More Information \| EOMES info	motif file (matrix)
	ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer(1.000) More Information \| ESR1 info	motif file (matrix)
	ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer(1.000) More Information \| ERG info	motif file (matrix)
	Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| ESRRA info	motif file (matrix)
	Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| ESRRB info	motif file (matrix)
	ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer(1.000) More Information \| ETS1 info	motif file (matrix)
	Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer(1.000) More Information \| info	motif file (matrix)
	ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer(1.000) More Information \| info	motif file (matrix)
	ETS(ETS)/Promoter/Homer(1.000) More Information \| info	motif file (matrix)
	ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer(1.000) More Information \| info	motif file (matrix)
	ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer(1.000) More Information \| ETV1 info	motif file (matrix)
	EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer(1.000) More Information \| info	motif file (matrix)
	EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer(1.000) More Information \| info	motif file (matrix)
	Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer(1.000) More Information \| FLI1 info	motif file (matrix)
	FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer(1.000) More Information \| info	motif file (matrix)
	FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer(1.000) More Information \| FOXA1 info	motif file (matrix)
	Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer(1.000) More Information \| FOXA2 info	motif file (matrix)
	Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer(1.000) More Information \| info	motif file (matrix)
	Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer(1.000) More Information \| FOXH1 info	motif file (matrix)
	Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer(1.000) More Information \| FOXO1 info	motif file (matrix)
	FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer(1.000) More Information \| FOXP1 info	motif file (matrix)
	FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer(1.000) More Information \| NR1H4 info	motif file (matrix)
	GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer(1.000) More Information \| GABPA info	motif file (matrix)
	Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer(1.000) More Information \| GATA2 info	motif file (matrix)
	GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(1.000) More Information \| info	motif file (matrix)
	GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(1.000) More Information \| info	motif file (matrix)
	GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(1.000) More Information \| info	motif file (matrix)
	GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(1.000) More Information \| info	motif file (matrix)
	GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(1.000) More Information \| GATA3 info	motif file (matrix)
	Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer(1.000) More Information \| GATA4 info	motif file (matrix)
	Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer(1.000) More Information \| info	motif file (matrix)
	GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer(1.000) More Information \| info	motif file (matrix)
	Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer(1.000) More Information \| GFI1B info	motif file (matrix)
	GFX(?)/Promoter/Homer(1.000) More Information \| info	motif file (matrix)
	GFY(?)/Promoter/Homer(1.000) More Information \| info	motif file (matrix)
	GFY-Staf/Promoters/Homer(1.000) More Information \| info	motif file (matrix)
	GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer(1.000) More Information \| GLI3 info	motif file (matrix)
	GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| NR3C1 info	motif file (matrix)
	GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer(1.000) More Information \| info	motif file (matrix)
	GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer(1.000) More Information \| GRHL2 info	motif file (matrix)
	Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer(1.000) More Information \| info	motif file (matrix)
	HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer(1.000) More Information \| HIF1A info	motif file (matrix)
	HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer(1.000) More Information \| HIF2A info	motif file (matrix)
	Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer(1.000) More Information \| HNF1A info	motif file (matrix)
	HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer(1.000) More Information \| HNF4A info	motif file (matrix)
	HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer(1.000) More Information \| ONECUT1 info	motif file (matrix)
	HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer(1.000) More Information \| HOXA2 info	motif file (matrix)
	HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer(1.000) More Information \| HOXA9 info	motif file (matrix)
	Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer(1.000) More Information \| HOXB4 info	motif file (matrix)
	Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer(1.000) More Information \| HOXC9 info	motif file (matrix)
	HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer(1.000) More Information \| HOXD13 info	motif file (matrix)
	HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| HSF1 info	motif file (matrix)
	HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer(1.000) More Information \| info	motif file (matrix)
	IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer(1.000) More Information \| IRF1 info	motif file (matrix)
	IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer(1.000) More Information \| IRF2 info	motif file (matrix)
	IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| IRF4 info	motif file (matrix)
	Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer(1.000) More Information \| ISL1 info	motif file (matrix)
	ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER(1.000) More Information \| info	motif file (matrix)
	Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| JUN info	motif file (matrix)
	c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| info	motif file (matrix)
	JunD(bZIP)/K562-JunD-ChIP-Seq/Homer(1.000) More Information \| JUND info	motif file (matrix)
	Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| KLF4 info	motif file (matrix)
	KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer(1.000) More Information \| KLF5 info	motif file (matrix)
	Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer(1.000) More Information \| LHX2 info	motif file (matrix)
	Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer(1.000) More Information \| LHX3 info	motif file (matrix)
	Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer(1.000) More Information \| info	motif file (matrix)
	Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer(1.000) More Information \| NR5A2 info	motif file (matrix)
	LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer(1.000) More Information \| NR1H2 info	motif file (matrix)
	MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer(1.000) More Information \| MAFA info	motif file (matrix)
	MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| MAFF info	motif file (matrix)
	MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer(1.000) More Information \| MAFK info	motif file (matrix)
	Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| MAX info	motif file (matrix)
	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| MAZ info	motif file (matrix)
	Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer(1.000) More Information \| MEF2A info	motif file (matrix)
	Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| MEF2C info	motif file (matrix)
	AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer(1.000) More Information \| MYBL1 info	motif file (matrix)
	MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer(1.000) More Information \| MYB info	motif file (matrix)
	Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer(1.000) More Information \| MYF5 info	motif file (matrix)
	MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer(1.000) More Information \| MYOD1 info	motif file (matrix)
	MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer(1.000) More Information \| MYOG info	motif file (matrix)
	Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(1.000) More Information \| NANOG info	motif file (matrix)
	NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer(1.000) More Information \| NEUROD1 info	motif file (matrix)
	NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer(1.000) More Information \| info	motif file (matrix)
	NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(1.000) More Information \| info	motif file (matrix)
	NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer(1.000) More Information \| NFIB info	motif file (matrix)
	NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer(1.000) More Information \| info	motif file (matrix)
	NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer(1.000) More Information \| NFATC1 info	motif file (matrix)
	NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| NFE2 info	motif file (matrix)
	NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer(1.000) More Information \| info	motif file (matrix)
	NFY(CCAAT)/Promoter/Homer(1.000) More Information \| NFYA info	motif file (matrix)
	Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer(1.000) More Information \| NKX2-1 info	motif file (matrix)
	Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer(1.000) More Information \| NKX2-5 info	motif file (matrix)
	Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer(1.000) More Information \| NKX3-1 info	motif file (matrix)
	Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer(1.000) More Information \| NKX6-1 info	motif file (matrix)
	n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| MYCN info	motif file (matrix)
	NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer(1.000) More Information \| NPAS2 info	motif file (matrix)
	Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer(1.000) More Information \| NR5A2 info	motif file (matrix)
	NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer(1.000) More Information \| NRF1 info	motif file (matrix)
	Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer(1.000) More Information \| NFE2L2 info	motif file (matrix)
	NRF1/Promoter/Homer(1.000) More Information \| info	motif file (matrix)
	Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer(1.000) More Information \| NR4A1 info	motif file (matrix)
	Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer(1.000) More Information \| POU2F2 info	motif file (matrix)
	Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| POU5F1 info	motif file (matrix)
	Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer(1.000) More Information \| info	motif file (matrix)
	OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| info	motif file (matrix)
	Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer(1.000) More Information \| OLIG2 info	motif file (matrix)
	NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer(1.000) More Information \| NFKB1 info	motif file (matrix)
	p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer(1.000) More Information \| TP53 info	motif file (matrix)
	p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| info	motif file (matrix)
	p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer(1.000) More Information \| TP63 info	motif file (matrix)
	NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer(1.000) More Information \| RELA info	motif file (matrix)
	PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer(1.000) More Information \| info	motif file (matrix)
	PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| PAX5 info	motif file (matrix)
	PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| info	motif file (matrix)
	Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer(1.000) More Information \| info	motif file (matrix)
	Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer(1.000) More Information \| info	motif file (matrix)
	Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer(1.000) More Information \| PAX7 info	motif file (matrix)
	Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer(1.000) More Information \| PAX8 info	motif file (matrix)
	PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer(1.000) More Information \| PBX1 info	motif file (matrix)
	Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| PBX3 info	motif file (matrix)
	Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer(1.000) More Information \| PDX1 info	motif file (matrix)
	Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer(1.000) More Information \| PHOX2A info	motif file (matrix)
	Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer(1.000) More Information \| PITX1 info	motif file (matrix)
	PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer(1.000) More Information \| PPARG info	motif file (matrix)
	PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer(1.000) More Information \| PRDM14 info	motif file (matrix)
	PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| PRDM1 info	motif file (matrix)
	PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer(1.000) More Information \| PRDM9 info	motif file (matrix)
	PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer(1.000) More Information \| PGR info	motif file (matrix)
	Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer(1.000) More Information \| PTF1A info	motif file (matrix)
	PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer(1.000) More Information \| info	motif file (matrix)
	PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(1.000) More Information \| SPI1 info	motif file (matrix)
	RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer(1.000) More Information \| RARG info	motif file (matrix)
	RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(1.000) More Information \| info	motif file (matrix)
	Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(1.000) More Information \| RBPJ info	motif file (matrix)
	REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer(1.000) More Information \| REST info	motif file (matrix)
	Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer(1.000) More Information \| NR1D1 info	motif file (matrix)
	Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(1.000) More Information \| RFX1 info	motif file (matrix)
	Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer(1.000) More Information \| RFX2 info	motif file (matrix)
	RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer(1.000) More Information \| RFX3 info	motif file (matrix)
	Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| RFX5 info	motif file (matrix)
	RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer(1.000) More Information \| info	motif file (matrix)
	RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer(1.000) More Information \| RUNX1 info	motif file (matrix)
	RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer(1.000) More Information \| RUNX2 info	motif file (matrix)
	RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer(1.000) More Information \| info	motif file (matrix)
	RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer(1.000) More Information \| RXRA info	motif file (matrix)
	SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer(1.000) More Information \| TAL1 info	motif file (matrix)
	Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer(1.000) More Information \| SIX1 info	motif file (matrix)
	Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer(1.000) More Information \| SMAD2 info	motif file (matrix)
	Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer(1.000) More Information \| SMAD3 info	motif file (matrix)
	Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer(1.000) More Information \| SMAD4 info	motif file (matrix)
	Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| SOX2 info	motif file (matrix)
	Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer(1.000) More Information \| SOX3 info	motif file (matrix)
	Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer(1.000) More Information \| SOX6 info	motif file (matrix)
	Sp1(Zf)/Promoter/Homer(1.000) More Information \| SP1 info	motif file (matrix)
	SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer(1.000) More Information \| SPDEF info	motif file (matrix)
	Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| SREBF1 info	motif file (matrix)
	Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| SREBF2 info	motif file (matrix)
	CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer(1.000) More Information \| SRF info	motif file (matrix)
	ZNF143\|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer(1.000) More Information \| ZNF143 info	motif file (matrix)
	STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer(1.000) More Information \| STAT1 info	motif file (matrix)
	Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer(1.000) More Information \| info	motif file (matrix)
	Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| STAT3 info	motif file (matrix)
	STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer(1.000) More Information \| STAT4 info	motif file (matrix)
	STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer(1.000) More Information \| STAT5A info	motif file (matrix)
	STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer(1.000) More Information \| info	motif file (matrix)
	STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer(1.000) More Information \| STAT6 info	motif file (matrix)
	T1ISRE(IRF)/Ifnb-Exp/Homer(1.000) More Information \| info	motif file (matrix)
	TATA-Box(TBP)/Promoter/Homer(1.000) More Information \| TBP info	motif file (matrix)
	Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer(1.000) More Information \| TBX21 info	motif file (matrix)
	Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer(1.000) More Information \| info	motif file (matrix)
	Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer(1.000) More Information \| TBX20 info	motif file (matrix)
	Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer(1.000) More Information \| TBX5 info	motif file (matrix)
	Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| TCF12 info	motif file (matrix)
	Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer(1.000) More Information \| TCF7L1 info	motif file (matrix)
	Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer(1.000) More Information \| TCF7L2 info	motif file (matrix)
	TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer(1.000) More Information \| info	motif file (matrix)
	Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| TFCP2L1 info	motif file (matrix)
	TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer(0.964) More Information \| TEAD2 info	motif file (matrix)
	TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer(1.000) More Information \| TEAD4 info	motif file (matrix)
	TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer(1.000) More Information \| info	motif file (matrix)
	Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(1.000) More Information \| NR2E1 info	motif file (matrix)
	TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer(1.000) More Information \| NR2C2 info	motif file (matrix)
	TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer(1.000) More Information \| THRA info	motif file (matrix)
	USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| USF1 info	motif file (matrix)
	Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer(1.000) More Information \| USF2 info	motif file (matrix)
	VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer(1.000) More Information \| VDR info	motif file (matrix)
	X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(1.000) More Information \| info	motif file (matrix)
	YY1(Zf)/Promoter/Homer(1.000) More Information \| YY1 info	motif file (matrix)
	ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer(1.000) More Information \| ZBTB33 info	motif file (matrix)
	ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(1.000) More Information \| ZFX info	motif file (matrix)
	Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer(1.000) More Information \| ZNF263 info	motif file (matrix)
	ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(1.000) More Information \| ZNF711 info	motif file (matrix)
	caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer(1.000) More Information	motif file (matrix)
	DREF/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	E-box/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	Initiator/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	TATA-box/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	Unknown2/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	Unknown3/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	Unknown4/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	Unknown5/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	Unknown6/Drosophila-Promoters/Homer(1.000) More Information	motif file (matrix)
	CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer(1.000) More Information	motif file (matrix)
	ABF1/SacCer-Promoters/Homer(1.000) More Information	motif file (matrix)
	Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer(1.000) More Information	motif file (matrix)
	GAGA-repeat/SacCer-Promoters/Homer(1.000) More Information	motif file (matrix)
	Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer(1.000) More Information	motif file (matrix)
	Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer(1.000) More Information	motif file (matrix)
	REB1/SacCer-Promoters/Homer(1.000) More Information	motif file (matrix)
	RLR1?/SacCer-Promoters/Homer(1.000) More Information	motif file (matrix)
	SFP1/SacCer-Promoters/Homer(1.000) More Information	motif file (matrix)
	SUT1?/SacCer-Promoters/Homer(1.000) More Information	motif file (matrix)
	TATA-box/SacCer-Promoters/Homer(1.000) More Information	motif file (matrix)
	TOD6?/SacCer-Promoters/Homer(1.000) More Information	motif file (matrix)
	E-box/Arabidopsis-Promoters/Homer(1.000) More Information	motif file (matrix)
	FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer(1.000) More Information	motif file (matrix)
	GAGA-repeat/Arabidopsis-Promoters/Homer(1.000) More Information	motif file (matrix)
	PCF/Arabidopsis-Promoters/Homer(1.000) More Information	motif file (matrix)
	PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer(1.000) More Information	motif file (matrix)
	SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer(1.000) More Information	motif file (matrix)
	Unknown2/Arabidopsis-Promoters/Homer(1.000) More Information	motif file (matrix)
	Unknown3/Arabidopsis-Promoters/Homer(1.000) More Information	motif file (matrix)
	Unknown4/Arabidopsis-Promoters/Homer(1.000) More Information	motif file (matrix)
	Unknown1/Arabidopsis-Promoters/Homer(1.000) More Information	motif file (matrix)