Information for NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer (Motif 140)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.325e+04
Information Content per bp:1.599
Total Number of Sequences:50000.0
Total Number of Target Sequences:14301.0
Total Instances of Motif:12622.8
Total Instances of Motif in Targets:10808.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CTTGGCANNNTGCCAA
CTTGGCANNNTGCCAA

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.92
Offset:1
Orientation:forward strand
Alignment:CTTGGCANNNTGCCAA
-CTGGCAGNCTGCCA-

MA0119.1_TLX1::NFIC/Jaspar

Match Rank:3
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA
-TTGGCATGGTGCCA-

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTTGGCANNNTGCCAA
-TTGGCA---------

RIM101/Literature(Harbison)/Yeast

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA
CTTGGCA---------

RIM101(MacIsaac)/Yeast

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA
CTTGGCA---------

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA
CTTGGCAA--------

MA0368.1_RIM101/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANNNTGCCAA
CTTGGCG---------

MA0313.1_HAP2/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTTGGCANNNTGCCAA
-TTGGT----------

RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGCANNNTGCCAA
CAKCTGKYCYYTTYCCC-