Information for GAGA-repeat/Arabidopsis-Promoters/Homer (Motif 283)


Reverse Opposite:

p-value:3.248e-301
log p-value:-6.919e+02
Information Content per bp:1.480
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CTCTCTCTCY
CTCTCTCTCY

SeqBias: GA-repeat

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCTCTCY
TCTCTCTCTC-

Trl/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCTCTCY
TTGCTCTCTC-

MA0205.1_Trl/Jaspar

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CTCTCTCTCY
TTGCTCTCTC-

Trl/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CTCTCTCTCY
TTNCTCTCTCTCT

Trl/dmmpmm(Down)/fly

Match Rank:6
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCTCTCY-
GCTCTCTCTCTC

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTCTCTCTCY-
TTGCTCTCTCTCTC

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:8
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CTCTCTCTCY-
CTYTCTYTCTCTCTC

z/dmmpmm(Down)/fly

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTCTCTCTCY
CACTCA----

MA0498.1_Meis1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTCTCTCTCY---
AGCTGTCACTCACCT