Information for RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer (Motif 200)


Reverse Opposite:

p-value:0.000e+00
log p-value:-2.546e+03
Information Content per bp:1.650
Total Number of Sequences:49998.4
Total Number of Target Sequences:7850.0
Total Instances of Motif:8696.3
Total Instances of Motif in Targets:4154.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TAGGGCAAAGGTCA
TAGGGCAAAGGTCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:2
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-TAGGGCAAAGGTCA
GTAGGGCAAAGGTCA

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:TAGGGCAAAGGTCA
TGGGGCAAAGGTCA

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:TAGGGCAAAGGTCA
GAGGTCAAAGGTCA

MA0504.1_NR2C2/Jaspar

Match Rank:5
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-TAGGGCAAAGGTCA
AGGGGTCAGAGGTCA

MA0484.1_HNF4G/Jaspar

Match Rank:6
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-TAGGGCAAAGGTCA
AGAGTCCAAAGTCCA

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:7
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-TAGGGCAAAGGTCA--
AAAGGTCAAAGGTCAAC

MA0017.1_NR2F1/Jaspar

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TAGGGCAAAGGTCA
AGGTTCAAAGGTCA

MA0512.1_Rxra/Jaspar

Match Rank:9
Score:0.82
Offset:5
Orientation:forward strand
Alignment:TAGGGCAAAGGTCA--
-----CAAAGGTCAGA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.81
Offset:5
Orientation:forward strand
Alignment:TAGGGCAAAGGTCA-
-----CAAAGGTCAG