Information for Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer (Motif 104)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.258e+03
Information Content per bp:1.595
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TGATTRATGGCY
TGATTRATGGCY

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TGATTRATGGCY
TGATTGATGA--

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:3
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-TGATTRATGGCY
ATGATTRATG---

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:4
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TGATTRATGGCY
ATGATKGATGRC-

MA0594.1_Hoxa9/Jaspar

Match Rank:5
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TGATTRATGGCY
TGATTTATGGC-

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TGATTRATGGCY
TGATTTATGGCC

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TGATTRATGGCY
TGATTTATGGCC

MA0485.1_Hoxc9/Jaspar

Match Rank:8
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TGATTRATGGCY
NTGATTTATGGCC

MA0070.1_PBX1/Jaspar

Match Rank:9
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--TGATTRATGGCY
TTTGATTGATGN--

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----TGATTRATGGCY
NNANTGATTGATNTTN