Information for X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer (Motif 242)


Reverse Opposite:

p-value:0.000e+00
log p-value:-2.713e+03
Information Content per bp:1.691
Total Number of Sequences:82384.0
Total Number of Target Sequences:41192.0
Total Instances of Motif:8738.9
Total Instances of Motif in Targets:6587.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCAA
GGTTGCCATGGCAA

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.99
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCAA
NGTTGCCATGGCAA

RFX1/RFX1_YPD/[](Harbison)/Yeast

Match Rank:3
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:GGTTGCCATGGCAA
-GTTGCCATGGCAA

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCAA-
KGTTGCCATGGCAAC

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GGTTGCCATGGCAA-
CGGTTGCCATGGCAAC

MA0600.1_RFX2/Jaspar

Match Rank:6
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----GGTTGCCATGGCAA-
NNNCNGTTGCCATGGNAAC

RFX1(MacIsaac)/Yeast

Match Rank:7
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GGTTGCCATGGCAA-
-GTTGCCATGGCAAC

MA0509.1_Rfx1/Jaspar

Match Rank:8
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:GGTTGCCATGGCAA-
-GTTGCCATGGNAAC

MA0510.1_RFX5/Jaspar

Match Rank:9
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCCATGGCAA
NCTGTTGCCAGGGAG-

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCCATGGCAA
NNCGTTGCTATGGNN-