Information for PCF/Arabidopsis-Promoters/Homer (Motif 284)


Reverse Opposite:

p-value:0.000e+00
log p-value:-2.560e+03
Information Content per bp:1.573
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PCF/Arabidopsis-Promoters/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NNWWWTGGGCYTDDN
NNWWWTGGGCYTDDN

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:NNWWWTGGGCYTDDN-
NNNNTTGGGCACNNCN

MA0381.1_SKN7/Jaspar

Match Rank:3
Score:0.69
Offset:7
Orientation:forward strand
Alignment:NNWWWTGGGCYTDDN
-------GGCCAT--

PCF2(TCP)/Oryza sativa/AthaMap

Match Rank:4
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:NNWWWTGGGCYTDDN
----GTGGGNCCCN-

PB0143.1_Klf7_2/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:NNWWWTGGGCYTDDN---
-NNNTNGGGCGTATNNTN

Hr46/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:NNWWWTGGGCYTDDN
--AATTGGGTCA---

SKN7(MacIsaac)/Yeast

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:NNWWWTGGGCYTDDN
---TCCGGGCC----

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:NNWWWTGGGCYTDDN
----CTAGGCCT---

EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-NNWWWTGGGCYTDDN
ATTTAATGGG------

hkb/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.65
Offset:5
Orientation:forward strand
Alignment:NNWWWTGGGCYTDDN
-----GGGGCGTTA-