Information for Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer (Motif 236)


Reverse Opposite:

p-value:0.000e+00
log p-value:-3.754e+03
Information Content per bp:1.656
Total Number of Sequences:82384.0
Total Number of Target Sequences:41192.0
Total Instances of Motif:29182.4
Total Instances of Motif in Targets:20020.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CTGGCAGNCTGCCA
CTGGCAGNCTGCCA

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAGNCTGCCA-
CTTGGCANNNTGCCAA

MA0119.1_TLX1::NFIC/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:CTGGCAGNCTGCCA
TTGGCATGGTGCCA

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTGGCAGNCTGCCA
TTGGCA--------

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGNCTGCCA
CTTGGCAA-------

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTGGCAGNCTGCCA
GGTCTGGCAT-------

RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCAGNCTGCCA
CAKCTGKYCYYTTYCCC

RIM101/Literature(Harbison)/Yeast

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGNCTGCCA
CTTGGCA--------

RIM101(MacIsaac)/Yeast

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGNCTGCCA
CTTGGCA--------

MA0597.1_THAP1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGNCTGCCA
TNNGGGCAG-------