Information for HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer (Motif 102)


Reverse Opposite:

p-value:0.000e+00
log p-value:-2.166e+03
Information Content per bp:1.713
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GYCATCMATCAT
GYCATCMATCAT

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GYCATCMATCAT
-TCATCAATCA-

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:3
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:GYCATCMATCAT
--CATYAATCAT

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-GYCATCMATCAT
RGCCATYAATCA-

MA0070.1_PBX1/Jaspar

Match Rank:5
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GYCATCMATCAT-
-CCATCAATCAAA

MA0594.1_Hoxa9/Jaspar

Match Rank:6
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GYCATCMATCAT
GCCATAAATCA-

PB0144.1_Lef1_2/Jaspar

Match Rank:7
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GYCATCMATCAT---
GAAGATCAATCACTTA

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GYCATCMATCAT
GGCCATAAATCA-

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:9
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GYCATCMATCAT---
GAAGATCAATCACTAA

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GYCATCMATCAT
GGCCATAAATCA-