Information for Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer (Motif 105)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.006e+03
Information Content per bp:1.720
Total Number of Sequences:49999.4
Total Number of Target Sequences:2178.0
Total Instances of Motif:1003.9
Total Instances of Motif in Targets:515.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGCCATAAATCA
GGCCATAAATCA

MA0485.1_Hoxc9/Jaspar

Match Rank:2
Score:0.99
Offset:0
Orientation:forward strand
Alignment:GGCCATAAATCA-
GGCCATAAATCAC

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GGCCATAAATCA
GGCCATAAATCA

MA0594.1_Hoxa9/Jaspar

Match Rank:4
Score:0.97
Offset:1
Orientation:forward strand
Alignment:GGCCATAAATCA
-GCCATAAATCA

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GGCCATAAATCA
RGCCATYAATCA

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.84
Offset:2
Orientation:forward strand
Alignment:GGCCATAAATCA
--TCATCAATCA

caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer

Match Rank:7
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GGCCATAAATCA
GGYCATAAAW--

MA0216.2_CAD/Jaspar

Match Rank:8
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGCCATAAATCA
GGCCATAAAAA-

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:9
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GGCCATAAATCA-
-GYCATCMATCAT

Abd-B/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GGCCATAAATCA
NNNGCCATAAANGN