Information for NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer (Motif 139)


Reverse Opposite:

p-value:0.000e+00
log p-value:-9.654e+03
Information Content per bp:1.769
Total Number of Sequences:50000.0
Total Number of Target Sequences:22740.0
Total Instances of Motif:32422.7
Total Instances of Motif in Targets:25145.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TTGCCAAG
TTGCCAAG

RIM101/Literature(Harbison)/Yeast

Match Rank:2
Score:0.89
Offset:1
Orientation:forward strand
Alignment:TTGCCAAG
-TGCCAAG

RIM101(MacIsaac)/Yeast

Match Rank:3
Score:0.89
Offset:1
Orientation:forward strand
Alignment:TTGCCAAG
-TGCCAAG

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:TTGCCAAG
-TGCCAA-

MA0368.1_RIM101/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TTGCCAAG
-CGCCAAG

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TTGCCAAG-----
ACTATGCCAACCTACC

MA0207.1_achi/Jaspar

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TTGCCAAG
-TGACAG-

MA0252.1_vis/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TTGCCAAG
CTGTCA--

Achi/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TTGCCAAG
NTTTGACAGC

Unknown3/Drosophila-Promoters/Homer

Match Rank:10
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCAAG----
GCGCTGCCAGMTBGT