Information for PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer (Motif 169)


Reverse Opposite:

p-value:1.987e-227
log p-value:-5.220e+02
Information Content per bp:1.681
Total Number of Sequences:49999.7
Total Number of Target Sequences:3602.0
Total Instances of Motif:266.3
Total Instances of Motif in Targets:199.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GTCACGCTCNCTGA
GTCACGCTCNCTGA

MA0067.1_Pax2/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTCACGCTCNCTGA
AGTCACGC-------

prd/dmmpmm(Noyes)/fly

Match Rank:3
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----GTCACGCTCNCTGA
AATCCGTCACGCT------

prd-PD/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTCACGCTCNCTGA
TNTCGTCACGGTTGACA-

RTG3/Literature(Harbison)/Yeast

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTCACGCTCNCTGA
GGTCAC---------

HVH21(HD-KNOTTED)/Hordeum vulgare/AthaMap

Match Rank:6
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GTCACGCTCNCTGA
ANCTGTCACNNN------

Hth/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTCACGCTCNCTGA
NCTGTCANAG-------

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTCACGCTCNCTGA
GTCATN--------

RTG3(MacIsaac)/Yeast

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTCACGCTCNCTGA
TGAGTCAT---------

MA0227.1_hth/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTCACGCTCNCTGA
CTGTCA----------