Information for Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer (Motif 96)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.565e+03
Information Content per bp:1.712
Total Number of Sequences:53740.0
Total Number of Target Sequences:26870.0
Total Instances of Motif:5118.7
Total Instances of Motif in Targets:3845.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CACAGCAGGGGG
CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---CACAGCAGGGGG
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---CACAGCAGGGGG
CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CACAGCAGGGGG
GAGCACAGCAGGACA

opa/dmmpmm(Noyes)/fly

Match Rank:5
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CACAGCAGGGGG--
--CAGCGGGGGGTC

MA0456.1_opa/Jaspar

Match Rank:6
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CACAGCAGGGGG--
--CAGCGGGGGGTC

PHD1/PHD1_BUT90/8-SUT1(Harbison)/Yeast

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CACAGCAGGGGG
-GCCGCAGG---

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CACAGCAGGGGG
--CAGATGGC--

sna/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CACAGCAGGGGG
---ANCAGGTGG

SWI5/Literature(Harbison)/Yeast

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CACAGCAGGGGG
-CCAGCA-----