Information for Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer (Motif 229)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.786e+03
Information Content per bp:1.776
Total Number of Sequences:19998.1
Total Number of Target Sequences:4459.0
Total Instances of Motif:1668.2
Total Instances of Motif in Targets:1298.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ACATCAAAGG
ACATCAAAGG

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:ACATCAAAGG
ACWTCAAAGG

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:forward strand
Alignment:ACATCAAAGG--
ACATCAAAGGNA

MA0523.1_TCF7L2/Jaspar

Match Rank:4
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--ACATCAAAGG--
AAAGATCAAAGGAA

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---ACATCAAAGG----
TATAGATCAAAGGAAAA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:6
Score:0.93
Offset:-3
Orientation:reverse strand
Alignment:---ACATCAAAGG----
NNNAGATCAAAGGANNN

PB0083.1_Tcf7_1/Jaspar

Match Rank:7
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---ACATCAAAGG----
TATAGATCAAAGGAAAA

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---ACATCAAAGG----
NANAGATCAAAGGGNNN

pan/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:ACATCAAAGG
--ATCAAAG-

pan/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.86
Offset:1
Orientation:forward strand
Alignment:ACATCAAAGG
-GATCAAAG-