Information for Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer (Motif 206)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.703e+03
Information Content per bp:1.753
Total Number of Sequences:20000.0
Total Number of Target Sequences:2266.0
Total Instances of Motif:3527.6
Total Instances of Motif in Targets:1915.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NCCATTGTTC
NCCATTGTTC

MA0077.1_SOX9/Jaspar

Match Rank:2
Score:0.95
Offset:1
Orientation:forward strand
Alignment:NCCATTGTTC
-CCATTGTTC

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.94
Offset:1
Orientation:forward strand
Alignment:NCCATTGTTC
-CCWTTGTY-

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.94
Offset:1
Orientation:forward strand
Alignment:NCCATTGTTC
-CCTTTGTT-

MA0515.1_Sox6/Jaspar

Match Rank:5
Score:0.94
Offset:1
Orientation:forward strand
Alignment:NCCATTGTTC-
-CCATTGTTTT

MA0445.1_D/Jaspar

Match Rank:6
Score:0.94
Offset:0
Orientation:forward strand
Alignment:NCCATTGTTC-
TCCATTGTTCT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.93
Offset:1
Orientation:forward strand
Alignment:NCCATTGTTC-
-CCATTGTTNY

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---NCCATTGTTC----
NNNTCCTTTGTTCTNNN

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---NCCATTGTTC---
ANNTCCATTGTTCNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---NCCATTGTTC----
TNNTCCTTTGTTCTNNT