Information for GAGA-repeat/SacCer-Promoters/Homer (Motif 272)


Reverse Opposite:

p-value:4.603e-49
log p-value:-1.113e+02
Information Content per bp:1.568
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CTYTCTYTCTCTCTC
CTYTCTYTCTCTCTC

MA0543.1_EOR-1/Jaspar

Match Rank:2
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:CTYTCTYTCTCTCTC-
-TCTCTGCGTCTCTNN

SeqBias: GA-repeat

Match Rank:3
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:CTYTCTYTCTCTCTC
---TCTCTCTCTC--

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:CTYTCTYTCTCTCTC
-TTGCTCTCTCTCTC

Trl/dmmpmm(Down)/fly

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:CTYTCTYTCTCTCTC
-GCTCTCTCTCTC--

Trl/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CTYTCTYTCTCTCTC
-TTNCTCTCTCTCT-

Trl/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.75
Offset:5
Orientation:reverse strand
Alignment:CTYTCTYTCTCTCTC
-----TTGCTCTCTC

MA0205.1_Trl/Jaspar

Match Rank:8
Score:0.75
Offset:5
Orientation:forward strand
Alignment:CTYTCTYTCTCTCTC
-----TTGCTCTCTC

MA0554.1_SOC1/Jaspar

Match Rank:9
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CTYTCTYTCTCTCTC-
TTTTTTTTTTTTTTTTTTTTT

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:10
Score:0.69
Offset:4
Orientation:forward strand
Alignment:CTYTCTYTCTCTCTC
----CTCTCTCTCY-