Information for TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer (Motif 237)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.414e+03
Information Content per bp:1.730
Total Number of Sequences:50001.0
Total Number of Target Sequences:2795.0
Total Instances of Motif:1078.2
Total Instances of Motif in Targets:671.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAAGGTCA
GAGGTCAAAGGTCA

MA0504.1_NR2C2/Jaspar

Match Rank:2
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAAAGGTCA
AGGGGTCAGAGGTCA

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:3
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAAAGGTCA--
AAAGGTCAAAGGTCAAC

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAAGGTCA
TAGGGCAAAGGTCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:5
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAAAGGTCA
GTAGGGCAAAGGTCA

MA0017.1_NR2F1/Jaspar

Match Rank:6
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GAGGTCAAAGGTCA
AGGTTCAAAGGTCA

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GAGGTCAAAGGTCA
TGGGGCAAAGGTCA

MA0484.1_HNF4G/Jaspar

Match Rank:8
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAAAGGTCA
AGAGTCCAAAGTCCA

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCAAAGGTCA
CANAGNNCAAAGTCCA

MA0114.2_HNF4A/Jaspar

Match Rank:10
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GAGGTCAAAGGTCA-
NAGNNCAAAGTCCAN