Information for Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer (Motif 146)


Reverse Opposite:

p-value:0.000e+00
log p-value:-3.482e+03
Information Content per bp:1.625
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RSCACTYRAG
RSCACTYRAG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-RSCACTYRAG
AASCACTCAA-

vnd/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--RSCACTYRAG--
NNNCCACTTNACAN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:4
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-RSCACTYRAG
AGCCACTCAAG

MA0247.2_tin/Jaspar

Match Rank:5
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:RSCACTYRAG-
-CCACTTGANA

MA0122.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:RSCACTYRAG
NCCACTTAN-

MA0264.1_ceh-22/Jaspar

Match Rank:7
Score:0.87
Offset:0
Orientation:forward strand
Alignment:RSCACTYRAG-
ACCACTTGAAA

MA0264.1_ceh-22/Jaspar

Match Rank:8
Score:0.87
Offset:0
Orientation:forward strand
Alignment:RSCACTYRAG-
ACCACTTGAAA

tin/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:RSCACTYRAG-
-CCACTTGAGN

tin/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.86
Offset:2
Orientation:forward strand
Alignment:RSCACTYRAG
--CACTTAA-