Information for Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer (Motif 202)


Reverse Opposite:

p-value:6.570e-264
log p-value:-6.060e+02
Information Content per bp:1.677
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GKVTCADRTTWC
GKVTCADRTTWC

PL0005.1_hlh-30/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GKVTCADRTTWC----
AGAATCACGTGACAATT

Six4/dmmpmm(Noyes_hd)/fly

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GKVTCADRTTWC
GGTATCAAAT---

MA0526.1_USF2/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GKVTCADRTTWC-
--GTCATGTGACC

E-box(HLH)/Promoter/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GKVTCADRTTWC---
---TCACGTGACCGG

MA0204.1_Six4/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GKVTCADRTTWC
GTATCA------

PB0105.1_Arid3a_2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GKVTCADRTTWC
ACCCGTATCAAATTT-

MA0093.2_USF1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GKVTCADRTTWC-
--GCCACGTGACC

MA0580.1_DYT1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GKVTCADRTTWC-----
---TCACGTGACTCACG

MA0246.1_so/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GKVTCADRTTWC
GTATCA------