Information for CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer (Motif 213)


Reverse Opposite:

p-value:0.000e+00
log p-value:-3.736e+03
Information Content per bp:1.682
Total Number of Sequences:49999.7
Total Number of Target Sequences:9076.0
Total Instances of Motif:4011.2
Total Instances of Motif in Targets:2872.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CCATATATGGNA
CCATATATGGNA

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--CCATATATGGNA
TTCCATATATGGAA

MA0083.2_SRF/Jaspar

Match Rank:3
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----CCATATATGGNA-
CATGCCCAAATAAGGCAA

MF0008.1_MADS_class/Jaspar

Match Rank:4
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:CCATATATGGNA
CCATATATGG--

AGL2(MADS)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CCATATATGGNA--
CTTACCATATATAGAAAT

MA0584.1_SEP1/Jaspar

Match Rank:6
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CCATATATGGNA--
CTTACCATATATAGAAAT

AGL3(MADS)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CCATATATGGNA--
NTTNCTATATATGGAAAN

MA0001.2_SEP4/Jaspar

Match Rank:8
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CCATATATGGNA--
NTTNCTATATATGGAAAN

AGL1(MADS)/Arabidopsis thaliana/AthaMap

Match Rank:9
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----CCATATATGGNA--
NTTACCCAATTTGGNAAN

MA0585.1_SHP1/Jaspar

Match Rank:10
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----CCATATATGGNA--
NTTACCCAATTTGGNAAN