Information for OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer (Motif 160)


Reverse Opposite:

p-value:0.000e+00
log p-value:-7.184e+03
Information Content per bp:1.685
Total Number of Sequences:30001.0
Total Number of Target Sequences:11899.0
Total Instances of Motif:4508.4
Total Instances of Motif in Targets:4187.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ATTTGCATAACAATG
ATTTGCATAACAATG

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:2
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATAACAATG
ATTTGCATAACAAAG

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:ATTTGCATAACAATG
ATTTGCATAA-----

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATAACAATG
TNTAATTTGCATACNA---

MA0507.1_POU2F2/Jaspar

Match Rank:5
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---ATTTGCATAACAATG
TTCATTTGCATAT-----

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATAACAATG
TNTAATTTGCATANNN---

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATAACAATG
ATTTGCATAT-----

nub/dmmpmm(Noyes)/fly

Match Rank:8
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---ATTTGCATAACAATG
CTNATTTGCATAT-----

MA0453.1_nub/Jaspar

Match Rank:9
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---ATTTGCATAACAATG
CTNATTTGCATA------

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ATTTGCATAACAATG
AAAATATGCATAATAAA-