Information for Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer (Motif 175)


Reverse Opposite:

p-value:0.000e+00
log p-value:-3.747e+03
Information Content per bp:1.731
Total Number of Sequences:50001.1
Total Number of Target Sequences:3840.0
Total Instances of Motif:1545.5
Total Instances of Motif in Targets:1332.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NCTGTCAATCAN
NCTGTCAATCAN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-NCTGTCAATCAN
GSCTGTCACTCA-

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-NCTGTCAATCAN--
AGCTGTCACTCACCT

MA0207.1_achi/Jaspar

Match Rank:4
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:NCTGTCAATCAN
-CTGTCA-----

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----NCTGTCAATCAN
AAGCACCTGTCAATAT-

MA0252.1_vis/Jaspar

Match Rank:6
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:NCTGTCAATCAN
-CTGTCA-----

MA0227.1_hth/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:NCTGTCAATCAN
-CTGTCA-----

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----NCTGTCAATCAN
NNNCAGCTGTCAATATN

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----NCTGTCAATCAN
AAAGACCTGTCAATCC-

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----NCTGTCAATCAN
AATTACCTGTCAATAC-