Information for CHR(?)/Hela-CellCycle-Expression/Homer (Motif 28)


Reverse Opposite:

p-value:2.277e-36
log p-value:-8.207e+01
Information Content per bp:1.744
Total Number of Sequences:20264.3
Total Number of Target Sequences:437.0
Total Instances of Motif:1292.0
Total Instances of Motif in Targets:122.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:CGGTTTCAAA
CGGTTTCAAA

Unknown6/Drosophila-Promoters/Homer

Match Rank:2
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CGGTTTCAAA-
-AATTTTAAAA

pan/dmmpmm(SeSiMCMC)/fly

Match Rank:3
Score:0.77
Offset:3
Orientation:forward strand
Alignment:CGGTTTCAAA
---TATCAAA

pan/dmmpmm(Papatsenko)/fly

Match Rank:4
Score:0.77
Offset:4
Orientation:reverse strand
Alignment:CGGTTTCAAA-
----ATCAAAG

pan/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CGGTTTCAAA-
---GATCAAAG

pan/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.75
Offset:4
Orientation:forward strand
Alignment:CGGTTTCAAA
----ATCAAA

MA0222.1_exd/Jaspar

Match Rank:7
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CGGTTTCAAA-
---TGTCAAAN

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CGGTTTCAAA--
--ACATCAAAGG

exd/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CGGTTTCAAA-
-NTTGTCAAAN

YER051W(MacIsaac)/Yeast

Match Rank:10
Score:0.69
Offset:4
Orientation:forward strand
Alignment:CGGTTTCAAA
----TTCGAA