CHR/Cell-Cycle-Exp/Homer
| Match Rank: | 1 |
| Score: | 1.00 |
| Offset: | 0 |
| Orientation: | forward strand |
| Alignment: | CGGTTTCAAA CGGTTTCAAA |
|

|
|
Unknown6/Drosophila-Promoters/Homer
| Match Rank: | 2 |
| Score: | 0.82 |
| Offset: | 1 |
| Orientation: | forward strand |
| Alignment: | CGGTTTCAAA- -AATTTTAAAA |
|

|
|
pan/dmmpmm(SeSiMCMC)/fly
| Match Rank: | 3 |
| Score: | 0.77 |
| Offset: | 3 |
| Orientation: | forward strand |
| Alignment: | CGGTTTCAAA ---TATCAAA |
|

|
|
pan/dmmpmm(Papatsenko)/fly
| Match Rank: | 4 |
| Score: | 0.77 |
| Offset: | 4 |
| Orientation: | reverse strand |
| Alignment: | CGGTTTCAAA- ----ATCAAAG |
|

|
|
pan/dmmpmm(Pollard)/fly
| Match Rank: | 5 |
| Score: | 0.75 |
| Offset: | 3 |
| Orientation: | forward strand |
| Alignment: | CGGTTTCAAA- ---GATCAAAG |
|

|
|
pan/dmmpmm(Bigfoot)/fly
| Match Rank: | 6 |
| Score: | 0.75 |
| Offset: | 4 |
| Orientation: | forward strand |
| Alignment: | CGGTTTCAAA ----ATCAAA |
|

|
|
MA0222.1_exd/Jaspar
| Match Rank: | 7 |
| Score: | 0.73 |
| Offset: | 3 |
| Orientation: | reverse strand |
| Alignment: | CGGTTTCAAA- ---TGTCAAAN |
|

|
|
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 8 |
| Score: | 0.72 |
| Offset: | 2 |
| Orientation: | forward strand |
| Alignment: | CGGTTTCAAA-- --ACATCAAAGG |
|

|
|
exd/dmmpmm(Noyes_hd)/fly
| Match Rank: | 9 |
| Score: | 0.71 |
| Offset: | 1 |
| Orientation: | reverse strand |
| Alignment: | CGGTTTCAAA- -NTTGTCAAAN |
|

|
|
YER051W(MacIsaac)/Yeast
| Match Rank: | 10 |
| Score: | 0.69 |
| Offset: | 4 |
| Orientation: | forward strand |
| Alignment: | CGGTTTCAAA ----TTCGAA |
|

|
|