Information for GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer (Motif 94)


Reverse Opposite:

p-value:0.000e+00
log p-value:-4.041e+03
Information Content per bp:1.607
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
VAGRACAKWCTGTYC

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
VAGRACAKNCTGTBC

GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC-
NAGNACANNNTGTNCT

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:VAGRACAKWCTGTYC-
NAGAACAGNCTGTNCT

MA0113.2_NR3C1/Jaspar

Match Rank:5
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:VAGRACAKWCTGTYC-
-AGNACATTNTGTTCT

MA0007.2_AR/Jaspar

Match Rank:6
Score:0.92
Offset:0
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
AAGAACAGAATGTTC

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--VAGRACAKWCTGTYC
CCAGGAACAG-------

MA0261.1_lin-14/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
--GAACAC-------

MA0261.1_lin-14/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
--GAACAC-------

ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:VAGRACAKWCTGTYC
NAGGTCACNNTGACC