Information for Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer (Motif 136)


Reverse Opposite:

p-value:0.000e+00
log p-value:-2.021e+03
Information Content per bp:1.604
Total Number of Sequences:51498.0
Total Number of Target Sequences:25749.0
Total Instances of Motif:9393.2
Total Instances of Motif in Targets:6781.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGCCATTAAC
GGCCATTAAC

ftz/dmmpmm(SeSiMCMC)/fly

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GGCCATTAAC
GNCCATTAA-

ftz/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GGCCATTAAC
GNCAATTA--

Ubx/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----GGCCATTAAC-----
ACNANGCCATTAANCCCNC

MA0248.1_tup/Jaspar

Match Rank:5
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:GGCCATTAAC
--CAATTAA-

ftz/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.86
Offset:2
Orientation:forward strand
Alignment:GGCCATTAAC
--CAATTAAA

ftz/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-GGCCATTAAC--
NGGTCATTAACNN

MA0214.1_bsh/Jaspar

Match Rank:8
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:GGCCATTAAC
--CAATTAA-

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:GGCCATTAAC
--YCATTAMC

CG11085/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:GGCCATTAAC-
-CCAATTAANN