Information for Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer (Motif 225)


Reverse Opposite:

p-value:2.489e-314
log p-value:-7.221e+02
Information Content per bp:1.684
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AGGTGHCAGACA
AGGTGHCAGACA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:AGGTGHCAGACA-
AGGTGNCAGACAG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:AGGTGHCAGACA-
-----CCAGACAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:AGGTGHCAGACA---
-----CCAGACRSVB

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:AGGTGHCAGACA-
-----BCAGACWA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:6
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AGGTGHCAGACA
--ATGCCAGACN

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGTGHCAGACA
AGGTGTCA----

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGTGHCAGACA-----
CAAATCCAGACATCACA

MA0207.1_achi/Jaspar

Match Rank:9
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGGTGHCAGACA
---TGACAG---

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AGGTGHCAGACA--
---TGGGAGACAAG