Information for Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer (Motif 195)


Reverse Opposite:

p-value:0.000e+00
log p-value:-9.059e+02
Information Content per bp:1.661
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:SCCTAGCAACAG
SCCTAGCAACAG

MA0510.1_RFX5/Jaspar

Match Rank:2
Score:0.96
Offset:-2
Orientation:forward strand
Alignment:--SCCTAGCAACAG-
CTCCCTGGCAACAGC

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--SCCTAGCAACAG-
TACCATAGCAACGGT

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--SCCTAGCAACAG-
CCGCATAGCAACGGA

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.91
Offset:-6
Orientation:forward strand
Alignment:------SCCTAGCAACAG-----
TGTGACCCTTAGCAACCGATTAA

MA0365.1_RFX1/Jaspar

Match Rank:6
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:SCCTAGCAACAG
---TAGCAACC-

MA0509.1_Rfx1/Jaspar

Match Rank:7
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----SCCTAGCAACAG
GTTGCCATGGCAAC--

MA0600.1_RFX2/Jaspar

Match Rank:8
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----SCCTAGCAACAG---
GTTGCCATGGCAACCGCGG

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---SCCTAGCAACAG
TTGCCATGGCAACN-

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---SCCTAGCAACAG
TTGCCATGGCAACC-