Information for FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer (Motif 77)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.228e+03
Information Content per bp:1.611
Total Number of Sequences:50000.9
Total Number of Target Sequences:897.0
Total Instances of Motif:1067.4
Total Instances of Motif in Targets:538.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AGGTCANTGACCTN
AGGTCANTGACCTN

EcR/usp/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-AGGTCANTGACCTN
GAGGTCAATGACCTC

MA0534.1_EcR::usp/Jaspar

Match Rank:3
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCANTGACCTN
AAGGTCAATGAACTN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGTCANTGACCTN
AGGTCA--------

MA0071.1_RORA_1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGGTCANTGACCTN
ATCAAGGTCA--------

MA0160.1_NR4A2/Jaspar

Match Rank:6
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:AGGTCANTGACCTN
------GTGACCTT

Hr46/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGTCANTGACCTN
GGGTCA--------

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:6
Orientation:forward strand
Alignment:AGGTCANTGACCTN--
------NTGACCTTGA

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGTCANTGACCTN
AGGTCAAGGTCA--

RTG3/Literature(Harbison)/Yeast

Match Rank:10
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:AGGTCANTGACCTN
------GTGACC--