Information for Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer (Motif 23)


Reverse Opposite:

p-value:0.000e+00
log p-value:-7.212e+03
Information Content per bp:1.768
Total Number of Sequences:50001.0
Total Number of Target Sequences:7166.0
Total Instances of Motif:11890.3
Total Instances of Motif in Targets:7880.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GTCATAAAAN
GTCATAAAAN

MA0465.1_CDX2/Jaspar

Match Rank:2
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--GTCATAAAAN
AAGCCATAAAA-

MA0216.2_CAD/Jaspar

Match Rank:3
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAAAN
GGCCATAAAAA

caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer

Match Rank:4
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAAAN
GGYCATAAAW-

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.94
Offset:-4
Orientation:forward strand
Alignment:----GTCATAAAAN--
AAAGGTAATAAAATTT

Abd-B/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GTCATAAAAN
-TCATAAAA-

Abd-B/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GTCATAAAAN
NTCATAAAAC

abd-B/dmmpmm(Noyes)/fly

Match Rank:8
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:GTCATAAAAN
-TCATAAAAC

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAAAN
NCYAATAAAA-

CG12361/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GTCATAAAAN
GTAATAAAAN