Information for LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer (Motif 123)


Reverse Opposite:

p-value:0.000e+00
log p-value:-8.147e+02
Information Content per bp:1.686
Total Number of Sequences:20000.0
Total Number of Target Sequences:958.0
Total Instances of Motif:332.4
Total Instances of Motif in Targets:269.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGGTTACTANAGGTCA
GGGTTACTANAGGTCA

MA0494.1_Nr1h3::Rxra/Jaspar

Match Rank:2
Score:0.97
Offset:-3
Orientation:reverse strand
Alignment:---GGGTTACTANAGGTCA
NNGAGGTTACTNNAGGTCA

TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer

Match Rank:3
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GGGTTACTANAGGTCA
-GGTCANYTGAGGWCA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.64
Offset:10
Orientation:forward strand
Alignment:GGGTTACTANAGGTCA
----------AGGTCA

MA0071.1_RORA_1/Jaspar

Match Rank:5
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GGGTTACTANAGGTCA
------ATCAAGGTCA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:GGGTTACTANAGGTCA-
-------TCAAGGTCAN

RTG3/Literature(Harbison)/Yeast

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGGTTACTANAGGTCA
-GGTCAC---------

MA0160.1_NR4A2/Jaspar

Match Rank:8
Score:0.61
Offset:9
Orientation:forward strand
Alignment:GGGTTACTANAGGTCA-
---------AAGGTCAC

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GGGTTACTANAGGTCA----
----TCTCAAAGGTCACCTG

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GGGTTACTANAGGTCA----
----TCTCAAAGGTCACGAG